PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC38_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 250aa    MW: 27901.4 Da    PI: 8.6671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC38_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-183482355
       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  RrC38_p4 34 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 82
              56******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-333396IPR001471AP2/ERF domain
CDDcd000182.20E-293389No hitNo description
PROSITE profilePS5103220.5343390IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-203490IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-273489IPR001471AP2/ERF domain
PRINTSPR003671.4E-73445IPR001471AP2/ERF domain
PfamPF008472.3E-113682IPR001471AP2/ERF domain
PRINTSPR003671.4E-75672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGFAIAHQNT TNTATTTTGE RRGRRSKQAE PGRFLGVRRR PWGRYAAEIR DPTTKERHWL  60
GTFDTAHEAA LAYDRAALSM RGTQGRTNFV YTPTDVHTIL TNPNLHSLIV SPYNNNQSLL  120
PNSSPQFVID HHPHYQNYHH HQQPKHIPVA SFKTPVRHQN SVFSTSPQNS SSNGSLSSSL  180
DEENNFFSFD GSNSSNNSGY LDCIVPNHCL KPPPETTTTQ SQIGAGFTTP SSKASDSYGW  240
FNNSYFEDGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-183489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693281e-165AC069328.1 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence.
GenBankAY5608731e-165AY560873.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18560) mRNA, complete cds.
GenBankCP0026881e-165CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627839.11e-154PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q21e-141ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A078DI741e-157A0A078DI74_BRANA; BnaA03g07180D protein
STRINGBra006466.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-96ERF family protein